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7F1A

Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound 78% GTP/22% GDP 1 K+, 1 Mg2+

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL41XU
Synchrotron siteSPring-8
BeamlineBL41XU
Temperature [K]100
Detector technologyPIXEL
Collection date2021-06-04
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths40.416, 92.835, 102.516
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.200 - 1.900
Rwork0.179
R-free0.22040
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7evb
RMSD bond length0.011
RMSD bond angle1.143
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (v1.17.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.6201.940
High resolution limit [Å]1.9001.900
Rmerge0.1232.337
Rmeas0.1272.397
Rpim0.0280.529
Number of reflections312572053
<I/σ(I)>14.91.7
Completeness [%]100.0100
Redundancy19.920.3
CC(1/2)0.750
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP929325% PEG 1500 0.1 M MMT (1 DL-malic acid: 2 MES: 2 Tris base), pH 9.0 Soak: 10 mM GTP, 1 mM MgCl2, 100 mM KCl (1 h)

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PDB entries from 2024-06-26

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