7F1A
Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound 78% GTP/22% GDP 1 K+, 1 Mg2+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-04 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.416, 92.835, 102.516 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.200 - 1.900 |
Rwork | 0.179 |
R-free | 0.22040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7evb |
RMSD bond length | 0.011 |
RMSD bond angle | 1.143 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (v1.17.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.620 | 1.940 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.123 | 2.337 |
Rmeas | 0.127 | 2.397 |
Rpim | 0.028 | 0.529 |
Number of reflections | 31257 | 2053 |
<I/σ(I)> | 14.9 | 1.7 |
Completeness [%] | 100.0 | 100 |
Redundancy | 19.9 | 20.3 |
CC(1/2) | 0.750 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 293 | 25% PEG 1500 0.1 M MMT (1 DL-malic acid: 2 MES: 2 Tris base), pH 9.0 Soak: 10 mM GTP, 1 mM MgCl2, 100 mM KCl (1 h) |