7EZD
Thorarchaeota Rab co-crystallized with GTP gamma-S
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 31 |
Unit cell lengths | 68.656, 68.656, 66.579 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.350 - 1.760 |
Rwork | 0.164 |
R-free | 0.18930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7ezb |
RMSD bond length | 0.004 |
RMSD bond angle | 0.753 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (v1.17.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.350 | 1.790 |
High resolution limit [Å] | 1.760 | 1.760 |
Rmerge | 0.078 | 1.123 |
Rmeas | 0.087 | |
Rpim | 0.038 | 0.549 |
Number of reflections | 34996 | 10206 |
<I/σ(I)> | 11 | 1.5 |
Completeness [%] | 99.9 | |
Redundancy | 5.2 | |
CC(1/2) | 0.558 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 100 mM MES, pH 5.5, 250 mM NaCl, 13% PEG 8000, 5 mM GTP gamma-S |