7EYS
Complex structure of SptF with Fe, alpha-ketoglutarate, and andiconin D
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 283 |
Detector technology | PIXEL |
Collection date | 2019-03-29 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 |
Unit cell lengths | 49.366, 72.227, 77.606 |
Unit cell angles | 81.58, 85.58, 70.24 |
Refinement procedure
Resolution | 47.700 - 1.950 |
R-factor | 0.2146 |
Rwork | 0.213 |
R-free | 0.26820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7eyr |
RMSD bond length | 0.005 |
RMSD bond angle | 0.691 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.700 | 1.990 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.085 | 0.403 |
Number of reflections | 70547 | 4499 |
<I/σ(I)> | 7.8 | 2.4 |
Completeness [%] | 97.0 | |
Redundancy | 3.6 | |
CC(1/2) | 0.993 | 0.907 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 283 | 0.27 M magnesium chloride, 16% w/v PEG 3350, 1.5% trimethylamine N-oxide dihydrate |