7EYR
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase SptF apo
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-09 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 |
Unit cell lengths | 49.570, 72.704, 78.985 |
Unit cell angles | 82.08, 84.95, 70.13 |
Refinement procedure
Resolution | 46.570 - 2.120 |
R-factor | 0.1975 |
Rwork | 0.196 |
R-free | 0.25130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5zm2 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.564 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.570 | 2.180 |
High resolution limit [Å] | 2.120 | 2.120 |
Rmerge | 0.098 | 0.441 |
Number of reflections | 56744 | 4456 |
<I/σ(I)> | 10.4 | 3.1 |
Completeness [%] | 97.6 | 93.5 |
Redundancy | 5.4 | |
CC(1/2) | 0.996 | 0.927 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 283 | 0.27 M magnesium chloride, 21% w/v PEG 3350, 1.5% trimethylamine N-oxide dihydrate |