7EX3
Crystal structure of Ebinur Lake virus cap snatching endonuclease in complex with inhibitor 3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-31 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.666, 70.873, 71.253 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.630 - 2.250 |
R-factor | 0.192 |
Rwork | 0.190 |
R-free | 0.22550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xi5 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19_4080) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.330 |
High resolution limit [Å] | 2.250 | 4.850 | 2.250 |
Rmerge | 0.099 | 0.051 | 0.501 |
Rmeas | 0.115 | 0.059 | 0.579 |
Rpim | 0.056 | 0.029 | 0.285 |
Total number of observations | 37851 | ||
Number of reflections | 9796 | 956 | 971 |
<I/σ(I)> | 7.4 | ||
Completeness [%] | 95.0 | 84.1 | 98.1 |
Redundancy | 3.9 | 3.7 | 3.8 |
CC(1/2) | 0.994 | 0.823 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 5.1 | 289 | PEG 3350 |