7EX2
Crystal structure of Ebinur Lake virus cap snatching endonuclease in complex with L-742,001 (methyl ester form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-01 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 40.409, 70.804, 69.860 |
Unit cell angles | 90.00, 90.06, 90.00 |
Refinement procedure
Resolution | 26.440 - 3.100 |
R-factor | 0.1826 |
Rwork | 0.179 |
R-free | 0.22710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xi5 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19_4080) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.210 |
High resolution limit [Å] | 3.100 | 6.670 | 3.100 |
Rmerge | 0.104 | 0.059 | 0.252 |
Rmeas | 0.121 | 0.067 | 0.293 |
Rpim | 0.060 | 0.032 | 0.146 |
Total number of observations | 22253 | ||
Number of reflections | 6248 | 613 | 618 |
<I/σ(I)> | 6.9 | ||
Completeness [%] | 85.1 | 81.2 | 84.8 |
Redundancy | 3.6 | 3.5 | 3.5 |
CC(1/2) | 0.997 | 0.895 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 5.3 | 289 | PEG 3350 |