7EWZ
Crystal structure of Ebinur Lake virus cap snatching endonuclease (D92A mutant)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-13 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 40.871, 72.189, 71.868 |
Unit cell angles | 90.00, 90.55, 90.00 |
Refinement procedure
Resolution | 27.050 - 2.050 |
R-factor | 0.2289 |
Rwork | 0.227 |
R-free | 0.27130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xi5 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19_4080) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.120 |
High resolution limit [Å] | 2.050 | 4.420 | 2.050 |
Rmerge | 0.078 | 0.061 | 0.549 |
Rmeas | 0.087 | 0.069 | 0.605 |
Rpim | 0.038 | 0.031 | 0.249 |
Total number of observations | 130729 | ||
Number of reflections | 24961 | 2665 | 2014 |
<I/σ(I)> | 12.2 | ||
Completeness [%] | 94.5 | 98.4 | 76.5 |
Redundancy | 5.2 | 5 | 4.7 |
CC(1/2) | 0.994 | 0.910 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 4.9 | 289 | PEG 3350 |