7EVD
Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound to 53% GTP/47% and 2 Na+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-12-11 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.361, 92.104, 102.824 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.900 - 1.450 |
Rwork | 0.152 |
R-free | 0.17620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7evc |
RMSD bond length | 0.015 |
RMSD bond angle | 1.535 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (v1.17.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 1.470 |
High resolution limit [Å] | 1.450 | 1.450 |
Rmerge | 0.114 | 0.593 |
Rmeas | 0.119 | 0.723 |
Rpim | 0.035 | 0.387 |
Number of reflections | 67867 | 2897 |
<I/σ(I)> | 34.2 | 1 |
Completeness [%] | 98.8 | |
Redundancy | 10.9 | |
CC(1/2) | 0.554 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 25% PEG 1500, 0.1 M MMT (1 DL-malic acid: 2 MES: 2 Tris base), pH 9.0, soaked with 10 mM GTP for 2 h, before back soaking without GTP (70 h), before freezing |