7EV1
Crystal structure of LI-Cadherin EC1-2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-05-17 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 48.900, 79.680, 62.490 |
Unit cell angles | 90.00, 99.02, 90.00 |
Refinement procedure
Resolution | 32.400 - 1.380 |
R-factor | 0.144 |
Rwork | 0.143 |
R-free | 0.18120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zmy |
RMSD bond length | 0.009 |
RMSD bond angle | 1.542 |
Data reduction software | MOSFLM (7.1.0) |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER (2.5.6) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.310 | 1.450 |
High resolution limit [Å] | 1.380 | 1.380 |
Rmerge | 0.088 | 0.834 |
Number of reflections | 93370 | 12915 |
<I/σ(I)> | 11.2 | 1.7 |
Completeness [%] | 96.3 | 91.7 |
Redundancy | 5.5 | 5.1 |
CC(1/2) | 0.998 | 0.687 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293.15 | 0.2 M Ammonium acetate, 30% 2-propanol, TRIS pH8.5 |