7EOO
Crystal structure of the Pepper aptamer in complex with HBC525
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRF BEAMLINE BL19U1 |
| Synchrotron site | SSRF |
| Beamline | BL19U1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-11-09 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.979 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 92.305, 34.723, 58.130 |
| Unit cell angles | 90.00, 127.87, 90.00 |
Refinement procedure
| Resolution | 36.431 - 2.230 |
| R-factor | 0.2285 |
| Rwork | 0.227 |
| R-free | 0.25460 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 7eog |
| Data reduction software | HKL-3000 |
| Data scaling software | HKL-2000 |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 2.310 |
| High resolution limit [Å] | 2.230 | 4.800 | 2.230 |
| Rmerge | 0.136 | 0.090 | 0.575 |
| Rmeas | 0.149 | 0.098 | 0.639 |
| Rpim | 0.058 | 0.039 | 0.271 |
| Total number of observations | 44622 | ||
| Number of reflections | 7136 | 764 | 646 |
| <I/σ(I)> | 3.5 | ||
| Completeness [%] | 97.1 | 98.6 | 86.8 |
| Redundancy | 6.3 | 6.5 | 4.9 |
| CC(1/2) | 0.995 | 0.820 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 289 | 0.1 M ammonium chloride, 0.005 M magnesium chloride, 0.025 M HEPES, pH 7.0, 1.25 M 1,6-hexanediol, 40% MPD |






