7EMZ
iron and alpha-ketoglutarate-dependent endoperoxidase NvfI W199F variant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-27 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.07 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 47.915, 81.112, 151.780 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.690 - 2.300 |
R-factor | 0.1971 |
Rwork | 0.193 |
R-free | 0.24790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7de2 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.575 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.920 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.136 | 0.721 |
Number of reflections | 27142 | 2614 |
<I/σ(I)> | 12.2 | 3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 7.5 | 7.9 |
CC(1/2) | 0.996 | 0.816 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 283 | 50 mM HEPES pH 7.5, 20% PEG3350, 20 mM alpha-ketoglutarate, 100 mM NaSCN |