7EJY
Complex Structure of antibody BD-503 and RBD of COVID-19
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-01-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 80.432, 144.083, 146.657 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.000 - 3.040 |
R-factor | 0.2184 |
Rwork | 0.214 |
R-free | 0.25350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7bwj |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.000 | 3.149 |
High resolution limit [Å] | 3.040 | 3.040 |
Rmerge | 0.876 | |
Rmeas | 0.275 | 0.920 |
Rpim | 0.077 | 0.272 |
Number of reflections | 15571 | 934 |
<I/σ(I)> | 10.61 | 2 |
Completeness [%] | 92.7 | |
Redundancy | 12.5 | |
CC(1/2) | 0.971 | 0.783 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.15M Ammonium sulfate, 0.1M Tris, pH 8.0, 15% (w/v) PEG 400 |