7EJN

Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-HKU1) spike protein

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	SPRING-8 BEAMLINE BL32XU
Synchrotron site	SPring-8
Beamline	BL32XU
Temperature [K]	100
Detector technology	PIXEL
Collection date	2021-02-12
Detector	DECTRIS EIGER X 9M
Wavelength(s)	1.000
Spacegroup name	P 21 21 21
Unit cell lengths	66.702, 77.716, 87.948
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	38.860 - 2.110
R-factor	0.2073
Rwork	0.203
R-free	0.26440
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	4f7m
RMSD bond length	0.008
RMSD bond angle	0.931
Data reduction software	XDS
Data scaling software	XDS
Phasing software	PHASER
Refinement software	PHENIX (1.13_2998)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	43.870	2.180
High resolution limit [Å]	2.100	2.100
Rmerge	0.136
Number of reflections	51282	5111
<I/σ(I)>	7.7
Completeness [%]	100.0
Redundancy	7.1
CC(1/2)	0.996	0.395

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	8.5	293	PEG 3350, Tris-HCl