7EIV
heterotetrameric glycyl-tRNA synthetase from Escherichia coli
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-07 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97918 |
Spacegroup name | F 2 2 2 |
Unit cell lengths | 207.371, 253.945, 270.738 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.580 - 2.680 |
R-factor | 0.2293 |
Rwork | 0.228 |
R-free | 0.24870 |
Structure solution method | SAD |
RMSD bond length | 0.003 |
RMSD bond angle | 1.210 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | CRANK2 |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.780 |
High resolution limit [Å] | 2.680 | 5.770 | 2.680 |
Rmerge | 0.084 | 0.064 | 0.602 |
Rmeas | 0.087 | 0.066 | 0.627 |
Rpim | 0.024 | 0.019 | 0.173 |
Total number of observations | 1340079 | ||
Number of reflections | 99458 | 10198 | 9862 |
<I/σ(I)> | 9.4 | ||
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 13.5 | 12.8 | 13.1 |
CC(1/2) | 0.998 | 0.963 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.8 | 291 | 0.4 M magnesium acetate, 0.1 M HEPES pH 6.8, 2% (v/v) PEG 3350, 2% (v/v) PEG 5000 MME, 2% (v/v) PEG 4000, 2% (v/v) PEG 2000 and 10% ethylene glycol |