7EI8
RNA kink-turn motif with 2-aminopurine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-29 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.60499 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 115.124, 42.895, 56.269 |
Unit cell angles | 90.00, 116.04, 90.00 |
Refinement procedure
Resolution | 48.260 - 3.100 |
R-factor | 0.2026 |
Rwork | 0.196 |
R-free | 0.25710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4c40 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.260 | 48.260 | 3.180 |
High resolution limit [Å] | 3.100 | 13.880 | 3.100 |
Rmerge | 0.066 | 0.038 | 0.334 |
Rmeas | 0.072 | 0.041 | 0.362 |
Total number of observations | 29309 | ||
Number of reflections | 4510 | 60 | 326 |
<I/σ(I)> | 17 | 32.66 | 4.48 |
Completeness [%] | 97.1 | 92.3 | 97 |
Redundancy | 6.499 | 5.567 | 6.61 |
CC(1/2) | 0.999 | 1.000 | 0.968 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | sodium cacodylate, hexammine cobalt, MPD, potassium chloride |