7EFN
Crystal structure of the gastric proton pump K791S/E820D/Y340N/E936V in (BYK)E2BeF state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2020-10-15 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 105.940, 105.940, 372.010 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.710 - 3.200 |
R-factor | 0.2704 |
Rwork | 0.268 |
R-free | 0.30810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ylv |
RMSD bond length | 0.004 |
RMSD bond angle | 0.895 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.710 | 3.300 |
High resolution limit [Å] | 3.200 | 3.200 |
Rmerge | 0.033 | 2.600 |
Rpim | 0.033 | 2.600 |
Number of reflections | 41073 | 1017 |
<I/σ(I)> | 9.15 | 0.28 |
Completeness [%] | 81.7 | 25.24 |
Redundancy | 2 | |
CC(1/2) | 1.000 | 0.160 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 10 glycerol, 20% PEG 2000 MME, 0.2M RbCl, 3% methylpentanediol, 5mM beta-mercaptoethanol |