7EFH
RNA kink-turn motif
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-15 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | P 42 2 2 |
Unit cell lengths | 51.434, 51.434, 44.344 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.720 - 2.700 |
R-factor | 0.2307 |
Rwork | 0.229 |
R-free | 0.24610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4cs1 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.720 | 25.720 | 2.780 |
High resolution limit [Å] | 2.700 | 11.450 | 2.700 |
Rmerge | 0.074 | 0.029 | 0.358 |
Rmeas | 0.081 | 0.034 | 0.394 |
Number of reflections | 1843 | 32 | 139 |
<I/σ(I)> | 20.23 | 37.34 | 5.08 |
Completeness [%] | 99.5 | 86.5 | 97.9 |
Redundancy | 5.929 | 4.188 | 5.676 |
CC(1/2) | 0.998 | 0.999 | 0.966 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | sodium cacodylate, MPD, spermine tetrahydrochloride, magnesium chloride |