7EDT
RNA duplex containing CC mispairs
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-06-06 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9204 |
Spacegroup name | P 1 |
Unit cell lengths | 24.296, 24.852, 28.249 |
Unit cell angles | 93.85, 106.02, 103.21 |
Refinement procedure
Resolution | 19.270 - 1.200 |
R-factor | 0.1471 |
Rwork | 0.144 |
R-free | 0.17670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | RNA duplex constructed using Coot |
Data reduction software | d*TREK |
Data scaling software | d*TREK (9.4SSI) |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.270 | 19.270 | 1.240 |
High resolution limit [Å] | 1.200 | 2.580 | 1.200 |
Rmerge | 0.079 | 0.061 | 0.261 |
Rmeas | 0.079 | ||
Total number of observations | 69661 | 6370 | 6621 |
Number of reflections | 17973 | 1705 | 1766 |
<I/σ(I)> | 10 | 27.6 | 3.6 |
Completeness [%] | 93.8 | 89.1 | 92.3 |
Redundancy | 3.85 | 3.61 | 3.75 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | sodium cacodylate, MPD, spermine tetrahydrochloride |