Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7ECK

RNA duplex containing C-Ag-A and U-Ag-A base pairs

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-17A
Synchrotron sitePhoton Factory
BeamlineBL-17A
Temperature [K]100
Detector technologyPIXEL
Collection date2016-03-06
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.98
Spacegroup nameP 32 2 1
Unit cell lengths43.408, 43.408, 379.673
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution42.190 - 2.790
R-factor0.2275
Rwork0.220
R-free0.29150
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.19042.1902.860
High resolution limit [Å]2.79012.4802.790
Rmerge0.0600.0300.332
Rmeas0.0690.0380.373
Total number of observations50030
Number of reflections11225160769
<I/σ(I)>14.124.563.92
Completeness [%]98.993.694.2
Redundancy4.4573.3624.559
CC(1/2)0.9990.9990.966
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293MOPS, MPD, spermine, lithium nitrate

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon