7ECK
RNA duplex containing C-Ag-A and U-Ag-A base pairs
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-03-06 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.98 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 43.408, 43.408, 379.673 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.190 - 2.790 |
R-factor | 0.2275 |
Rwork | 0.220 |
R-free | 0.29150 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.190 | 42.190 | 2.860 |
High resolution limit [Å] | 2.790 | 12.480 | 2.790 |
Rmerge | 0.060 | 0.030 | 0.332 |
Rmeas | 0.069 | 0.038 | 0.373 |
Total number of observations | 50030 | ||
Number of reflections | 11225 | 160 | 769 |
<I/σ(I)> | 14.1 | 24.56 | 3.92 |
Completeness [%] | 98.9 | 93.6 | 94.2 |
Redundancy | 4.457 | 3.362 | 4.559 |
CC(1/2) | 0.999 | 0.999 | 0.966 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | MOPS, MPD, spermine, lithium nitrate |