7EC9
Structure of the Thermotoga maritima Family 5 endo-glucanase in complex with 1-deoxynojiromycin
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | BRUKER AXS MICROSTAR |
| Temperature [K] | 100 |
| Detector technology | IMAGE PLATE |
| Collection date | 2014-02-14 |
| Detector | MAR scanner 345 mm plate |
| Wavelength(s) | 1.5418 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 61.330, 62.280, 202.690 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 39.306 - 1.800 |
| R-factor | 0.1417 |
| Rwork | 0.141 |
| R-free | 0.16810 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1vjz |
| RMSD bond length | 0.005 |
| RMSD bond angle | 0.808 |
| Data reduction software | MOSFLM |
| Data scaling software | Aimless (0.5.17) |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.11.1) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 42.720 | 42.720 | 1.840 |
| High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
| Rmerge | 0.050 | 0.041 | 0.181 |
| Rmeas | 0.054 | 0.042 | 0.213 |
| Rpim | 0.018 | 0.012 | 0.111 |
| Total number of observations | 496396 | 8619 | 10697 |
| Number of reflections | 69266 | 694 | 3019 |
| <I/σ(I)> | 24.7 | 51.8 | 6.1 |
| Completeness [%] | 95.0 | 99.2 | 71.5 |
| Redundancy | 7.2 | 12.4 | 3.5 |
| CC(1/2) | 0.999 | 0.999 | 0.964 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 293 | 100 mM sodium citrate tribasic dihydrate (pH 5.8-6.2), 8-14% (v/v) isopropanol, 8-16% (w/v) PEG 4000 |






