7EC9
Structure of the Thermotoga maritima Family 5 endo-glucanase in complex with 1-deoxynojiromycin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | BRUKER AXS MICROSTAR |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2014-02-14 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 61.330, 62.280, 202.690 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.306 - 1.800 |
R-factor | 0.1417 |
Rwork | 0.141 |
R-free | 0.16810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vjz |
RMSD bond length | 0.005 |
RMSD bond angle | 0.808 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.5.17) |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.720 | 42.720 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.050 | 0.041 | 0.181 |
Rmeas | 0.054 | 0.042 | 0.213 |
Rpim | 0.018 | 0.012 | 0.111 |
Total number of observations | 496396 | 8619 | 10697 |
Number of reflections | 69266 | 694 | 3019 |
<I/σ(I)> | 24.7 | 51.8 | 6.1 |
Completeness [%] | 95.0 | 99.2 | 71.5 |
Redundancy | 7.2 | 12.4 | 3.5 |
CC(1/2) | 0.999 | 0.999 | 0.964 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 100 mM sodium citrate tribasic dihydrate (pH 5.8-6.2), 8-14% (v/v) isopropanol, 8-16% (w/v) PEG 4000 |