7E7M
Crystal Structure Analysis of the Streptococcus agalactiae Ribose Binding Protein RbsB
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-01-05 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97915 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.631, 151.220, 169.856 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.590 - 2.850 |
R-factor | 0.2126 |
Rwork | 0.210 |
R-free | 0.25830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ioy |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.630 | 39.630 | 3.000 |
High resolution limit [Å] | 2.850 | 9.010 | 2.850 |
Rmerge | 0.122 | 0.028 | 0.652 |
Rmeas | 0.134 | 0.030 | 0.722 |
Rpim | 0.055 | 0.012 | 0.301 |
Total number of observations | 121350 | ||
Number of reflections | 22672 | 674 | 3375 |
<I/σ(I)> | 11.7 | ||
Completeness [%] | 94.4 | 84.2 | 97.2 |
Redundancy | 5.4 | 5.6 | 5.3 |
CC(1/2) | 0.996 | 0.999 | 0.758 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 7 | 293 | jeffamime ED-2001 |