7E3T
Crystal structure of TrmL from Mycoplasma capricolum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 11C |
Synchrotron site | PAL/PLS |
Beamline | 11C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-28 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9794 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 79.824, 79.824, 117.333 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.770 - 2.100 |
R-factor | 0.1971 |
Rwork | 0.195 |
R-free | 0.23950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4kdz |
RMSD bond length | 0.009 |
RMSD bond angle | 1.499 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 (0.7.4) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.140 |
High resolution limit [Å] | 2.100 | 5.700 | 2.100 |
Rmerge | 0.096 | 0.039 | 1.388 |
Rmeas | 0.101 | 0.042 | 1.474 |
Rpim | 0.031 | 0.014 | 0.482 |
Total number of observations | 137705 | ||
Number of reflections | 13552 | 792 | 652 |
<I/σ(I)> | 3.9 | ||
Completeness [%] | 99.9 | 99.4 | 99.8 |
Redundancy | 10.2 | 9.1 | 8.6 |
CC(1/2) | 0.999 | 0.714 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | 0.1M MES monohydrate pH 6.5, 0.05M Cesium chloride, 30%v/v Jeffamine M-600 |