7E3S
Crystal structure of TrmL from Shewanella oneidensis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-05-11 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.97957 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 74.816, 77.988, 101.044 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.020 - 2.100 |
R-factor | 0.1886 |
Rwork | 0.186 |
R-free | 0.23890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4kdz |
RMSD bond length | 0.007 |
RMSD bond angle | 1.441 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.140 |
High resolution limit [Å] | 2.090 | 5.700 | 2.100 |
Rmerge | 0.153 | 0.068 | 1.086 |
Rmeas | 0.161 | 0.071 | 1.174 |
Rpim | 0.048 | 0.020 | 0.427 |
Number of reflections | 17438 | 971 | 752 |
<I/σ(I)> | 5 | ||
Completeness [%] | 98.2 | 99.8 | 85.6 |
Redundancy | 10.7 | 13 | 6.1 |
CC(1/2) | 0.999 | 0.776 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 298 | 0.2M Ammonium acetate, 0.1M Sodium citrate tribasic dehydrate pH5.6, 30%w/v PEG 4000 |