7E3Q
Crystal structure of SAH bound TrmL from Vibrio vulnificus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 11C |
Synchrotron site | PAL/PLS |
Beamline | 11C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-28 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.97942 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 67.354, 67.354, 145.611 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.490 - 2.700 |
R-factor | 0.1921 |
Rwork | 0.189 |
R-free | 0.25150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4kdz |
RMSD bond length | 0.009 |
RMSD bond angle | 1.595 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.750 |
High resolution limit [Å] | 2.700 | 7.320 | 2.700 |
Rmerge | 0.203 | 0.069 | 0.821 |
Rmeas | 0.220 | 0.075 | 0.885 |
Rpim | 0.081 | 0.029 | 0.328 |
Total number of observations | 67737 | ||
Number of reflections | 9778 | 562 | 463 |
<I/σ(I)> | 2.9 | ||
Completeness [%] | 99.6 | 96.4 | 99.8 |
Redundancy | 6.9 | 6 | 7 |
CC(1/2) | 0.995 | 0.750 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | 0.1M Tris-hydrochloride pH 8.5, 0.2M Magnesium chloride hexahydrate, 30% w/v PEG 4000, 40% v/v tert-Butano |