7DQK
A nicotine MATE transporter, Nicotiana tabacum MATE2 (NtMATE2)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-16 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 61.000, 89.370, 228.960 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.200 - 3.500 |
R-factor | 0.2637 |
Rwork | 0.259 |
R-free | 0.31130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5yck |
RMSD bond length | 0.002 |
RMSD bond angle | 0.438 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.19rc6_4061) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.625 |
High resolution limit [Å] | 3.500 | 3.500 |
Number of reflections | 16478 | 1625 |
<I/σ(I)> | 7.66 | 1.18 |
Completeness [%] | 99.7 | |
Redundancy | 34.4 | |
CC(1/2) | 0.996 | 0.621 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 7.5 | 293 | monoolein (NU-CHEK-PREP), PEG 300 (Sigma-Aldrich), NH4H2PO4, HEPES-Na, 2.5 mM nicotine |