7DO7
Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(NAD and L-rhamnose bound-form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL45XU |
Synchrotron site | SPring-8 |
Beamline | BL45XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-20 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 68.470, 97.931, 70.302 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.989 - 1.570 |
R-factor | 0.2243 |
Rwork | 0.223 |
R-free | 0.25880 |
Structure solution method | MOLECULAR REPLACEMENT |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 48.970 | 1.600 |
High resolution limit [Å] | 1.570 | 8.600 | 1.570 |
Rmerge | 0.291 | 0.070 | 1.008 |
Rmeas | 0.303 | 0.073 | 1.046 |
Rpim | 0.081 | 0.019 | 0.278 |
Total number of observations | 5586 | 45576 | |
Number of reflections | 66716 | 481 | 3285 |
<I/σ(I)> | 8.7 | 18.7 | 1.9 |
Completeness [%] | 100.0 | 99.2 | 100 |
Redundancy | 13.7 | 11.6 | 13.9 |
CC(1/2) | 0.991 | 0.999 | 0.886 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M Tris-HCl (pH 8.0), 0.2 M NaCl, 24.5% (w/v) PEG 3350 |