7DKL
Crystal structure of the tandem DEP domains of DEPTOR
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-26 |
Detector | DECTRIS PILATUS 300K |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.582, 63.582, 89.081 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.876 - 1.500 |
R-factor | 0.1798 |
Rwork | 0.178 |
R-free | 0.21750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1o7f |
RMSD bond length | 0.005 |
RMSD bond angle | 0.777 |
Data reduction software | DENZO |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.530 |
High resolution limit [Å] | 1.500 | 4.070 | 1.500 |
Rmerge | 0.077 | 0.048 | 0.658 |
Rmeas | 0.080 | 0.051 | 0.694 |
Rpim | 0.023 | 0.014 | 0.216 |
Total number of observations | 412973 | ||
Number of reflections | 36176 | 2011 | 1758 |
<I/σ(I)> | 7 | ||
Completeness [%] | 98.2 | 99.1 | 96.1 |
Redundancy | 11.4 | 11.3 | 9.6 |
CC(1/2) | 0.998 | 0.854 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.1M Ammonium acetate, 24% PEG 3350 |