7DGO
The Zn-bound dimeric structure of K79H/G80A/H81A myoglobin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL38B1 |
Synchrotron site | SPring-8 |
Beamline | BL38B1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-02 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.738, 63.141, 79.466 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.980 - 2.000 |
R-factor | 0.21575 |
Rwork | 0.213 |
R-free | 0.26504 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3vm9 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.520 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.980 | 2.050 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.068 | 0.732 |
Number of reflections | 18568 | 1354 |
<I/σ(I)> | 17.7 | 2.3 |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 6.3 | 6.6 |
CC(1/2) | 0.999 | 0.772 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 0.1 M Sodium acetate, 0.1 M Tris-HCl, 25% (w/v) PEG 6,000 |