7DFT
Crystal structure of Xanthomonas oryzae ClpP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-10 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9735 |
Spacegroup name | P 42 21 2 |
Unit cell lengths | 132.548, 132.548, 187.400 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.639 - 1.800 |
R-factor | 0.1883 |
Rwork | 0.186 |
R-free | 0.22240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3sta |
RMSD bond length | 0.008 |
RMSD bond angle | 0.881 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 1.860 |
High resolution limit [Å] | 1.791 | 3.880 | 1.800 |
Rmerge | 0.091 | 0.052 | 0.531 |
Rmeas | 0.094 | 0.053 | 0.562 |
Rpim | 0.021 | 0.011 | 0.174 |
Number of reflections | 154153 | 16224 | 14800 |
<I/σ(I)> | 6.7 | ||
Completeness [%] | 99.4 | 99.9 | 96.9 |
Redundancy | 16.9 | 24 | 9.5 |
CC(1/2) | 0.999 | 0.257 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 0.1 M Sodium acetate trihydrate, 3.0 M Sodium chloride |