Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7DDL

Crystal structures of Na+,K+-ATPase in complex with bufalin

Replaces:  6KPV
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL41XU
Synchrotron siteSPring-8
BeamlineBL41XU
Temperature [K]100
Detector technologyPIXEL
Collection date2020-07-20
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths115.721, 117.646, 492.068
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution14.990 - 3.200
R-factor0.2424
Rwork0.241
R-free0.28090
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6KPU
RMSD bond length0.005
RMSD bond angle0.893
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.635
High resolution limit [Å]3.2003.200
Rmerge0.0880.731
Rmeas0.1000.857
Rpim0.0450.437
Number of reflections514482572
<I/σ(I)>6.81.5
Completeness [%]46.07.3
Redundancy4.43.5
CC(1/2)0.9980.279
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP28816% PEG 2000 MME, 10% GLYCEROL, 200mM MAGNESIUM CHLORIDE, 5mM GSH, 0.1mM DTT, 0.0001% BHT, 100mM MES-NMDG, PH 6.2

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon