Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 115.721, 117.646, 492.068 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 14.990 - 3.200 |
R-factor | 0.2424 |
Rwork | 0.241 |
R-free | 0.28090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6KPU |
RMSD bond length | 0.005 |
RMSD bond angle | 0.893 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.635 |
High resolution limit [Å] | 3.200 | 3.200 |
Rmerge | 0.088 | 0.731 |
Rmeas | 0.100 | 0.857 |
Rpim | 0.045 | 0.437 |
Number of reflections | 51448 | 2572 |
<I/σ(I)> | 6.8 | 1.5 |
Completeness [%] | 46.0 | 7.3 |
Redundancy | 4.4 | 3.5 |
CC(1/2) | 0.998 | 0.279 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 288 | 16% PEG 2000 MME, 10% GLYCEROL, 200mM MAGNESIUM CHLORIDE, 5mM GSH, 0.1mM DTT, 0.0001% BHT, 100mM MES-NMDG, PH 6.2 |