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7DDI

Crystal structures of Na+,K+-ATPase in complex with digitoxin

Replaces:  6KPX
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL41XU
Synchrotron siteSPring-8
BeamlineBL41XU
Temperature [K]100
Detector technologyPIXEL
Collection date2015-12-19
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1
Spacegroup nameP 21 21 21
Unit cell lengths115.270, 117.715, 491.243
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution16.000 - 3.720
R-factor0.1883
Rwork0.186
R-free0.23310
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6KPU
RMSD bond length0.005
RMSD bond angle0.877
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.820
High resolution limit [Å]3.7003.700
Rmerge0.0940.336
Number of reflections2605559
<I/σ(I)>17.4
Completeness [%]35.9
Redundancy14.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP28816% PEG 2000 MME, 10% GLYCEROL, 200mM MAGNESIUM CHLORIDE, 5mM GSH, 0.1mM DTT, 0.0001% BHT, 100mM MES-NMDG, PH 6.2

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