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7D9Y

DNA binding domain of human DNA Ligase IV mutant - A3V

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID30B
Synchrotron siteESRF
BeamlineID30B
Temperature [K]100
Detector technologyPIXEL
Collection date2018-11-22
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.97925
Spacegroup nameF 41 3 2
Unit cell lengths204.619, 204.619, 204.619
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.380 - 2.760
R-factor0.2361
Rwork0.234
R-free0.27570
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7d9k
RMSD bond length0.005
RMSD bond angle0.763
Data reduction softwareiMOSFLM (7.2.2)
Data scaling softwareAimless (0.7.2)
Phasing softwareMOLREP (11.6.04)
Refinement softwarePHENIX (1.11.1-2575)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]39.38039.3802.910
High resolution limit [Å]2.7608.7402.760
Rmerge0.1380.0410.962
Rmeas0.1430.0430.991
Rpim0.0350.0130.238
Number of reflections99283881414
<I/σ(I)>11.8
Completeness [%]100.099100
Redundancy16.612.517
CC(1/2)0.9980.9980.814
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8277.150.125 M Tris pH 8.0, 20 % SOKALAN CP 42, 7.5% Methanol

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PDB entries from 2024-08-07

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