7D9Y
DNA binding domain of human DNA Ligase IV mutant - A3V
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-22 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97925 |
Spacegroup name | F 41 3 2 |
Unit cell lengths | 204.619, 204.619, 204.619 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.380 - 2.760 |
R-factor | 0.2361 |
Rwork | 0.234 |
R-free | 0.27570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7d9k |
RMSD bond length | 0.005 |
RMSD bond angle | 0.763 |
Data reduction software | iMOSFLM (7.2.2) |
Data scaling software | Aimless (0.7.2) |
Phasing software | MOLREP (11.6.04) |
Refinement software | PHENIX (1.11.1-2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.380 | 39.380 | 2.910 |
High resolution limit [Å] | 2.760 | 8.740 | 2.760 |
Rmerge | 0.138 | 0.041 | 0.962 |
Rmeas | 0.143 | 0.043 | 0.991 |
Rpim | 0.035 | 0.013 | 0.238 |
Number of reflections | 9928 | 388 | 1414 |
<I/σ(I)> | 11.8 | ||
Completeness [%] | 100.0 | 99 | 100 |
Redundancy | 16.6 | 12.5 | 17 |
CC(1/2) | 0.998 | 0.998 | 0.814 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 277.15 | 0.125 M Tris pH 8.0, 20 % SOKALAN CP 42, 7.5% Methanol |