7D9H
SpdH Spermidine dehydrogenase N33 truncation structure
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRF BEAMLINE BL19U1 |
| Synchrotron site | SSRF |
| Beamline | BL19U1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-04-14 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.97700 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 69.284, 84.926, 101.081 |
| Unit cell angles | 90.00, 98.40, 90.00 |
Refinement procedure
| Resolution | 38.740 - 2.310 |
| R-factor | 0.1542 |
| Rwork | 0.151 |
| R-free | 0.21430 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 7d9f |
| RMSD bond length | 0.008 |
| RMSD bond angle | 0.943 |
| Data reduction software | HKL-3000 |
| Data scaling software | HKL-3000 |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 2.340 |
| High resolution limit [Å] | 2.300 | 2.300 |
| Rpim | 0.037 | 0.089 |
| Number of reflections | 48990 | 2445 |
| <I/σ(I)> | 15.8 | 7.7 |
| Completeness [%] | 96.8 | 97.8 |
| Redundancy | 3 | 3 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION | 6.5 | 293 | 0.1M Bis Tris pH6.5, 20% w/v polyethylene glycol (PEG) 3350 |
