7D9E
Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens complexed with L-DON
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-06-05 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 49.170, 99.160, 53.990 |
Unit cell angles | 90.00, 102.60, 90.00 |
Refinement procedure
Resolution | 40.100 - 1.500 |
R-factor | 0.1426 |
Rwork | 0.142 |
R-free | 0.15670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5zjg |
RMSD bond length | 0.007 |
RMSD bond angle | 1.018 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.530 | 1.520 |
High resolution limit [Å] | 1.500 | 1.500 |
Rmerge | 0.059 | 0.588 |
Number of reflections | 80575 | 6340 |
<I/σ(I)> | 13.9 | |
Completeness [%] | 99.9 | |
Redundancy | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | The mother solution: 16% (w/v) PEG 8000, 15% (w/v) PEG 400, 0.1M HEPES pH7, 150mM Gly-Gly, 50 mM Lys The obtained crystal was soaked into the solution containing 50mM L-DON for 15 min before the X-ray diffraction measurement. |