7D4K
Crystal structure of Tmm from Pelagibacter sp. strain HTCC7211
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-16 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 69.415, 82.076, 97.907 |
Unit cell angles | 90.00, 98.13, 90.00 |
Refinement procedure
Resolution | 48.550 - 1.800 |
R-factor | 0.219 |
Rwork | 0.217 |
R-free | 0.25000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ipy |
RMSD bond length | 0.006 |
RMSD bond angle | 1.135 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX (1.6.4_486) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.830 |
High resolution limit [Å] | 1.796 | 1.800 |
Rmerge | 0.105 | 0.492 |
Rmeas | 0.126 | 0.107 |
Rpim | 0.068 | 0.058 |
Total number of observations | 325628 | |
Number of reflections | 98662 | 4991 |
<I/σ(I)> | 5.9 | |
Completeness [%] | 98.1 | 98.6 |
Redundancy | 3.3 | 3.3 |
CC(1/2) | 0.969 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.2 M ammonium citrate tribasic, 0.1 M imidazole (pH 7.0) and 20% (w/v) polyethylene glycol monomethyl ether 2000 |