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7D4A

The Crystal Structure of human JMJD2A Tudor domain from Biortus

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID30B
Synchrotron siteESRF
BeamlineID30B
Temperature [K]100
Detector technologyPIXEL
Collection date2020-09-11
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.976253
Spacegroup nameI 41 3 2
Unit cell lengths135.110, 135.110, 135.110
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution55.219 - 2.201
Rwork0.230
R-free0.27220
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2gf7
RMSD bond length0.004
RMSD bond angle1.255
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]67.5602.260
High resolution limit [Å]2.2002.200
Rmerge0.1292.749
Number of reflections11007836
<I/σ(I)>21.4
Completeness [%]99.9
Redundancy41.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.1M NaCl, 0.1M HEPES pH7.5, 1.6M (NH4)2SO4

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PDB entries from 2025-06-11

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