7D1G
Crystal structure of Glyceraldehyde-3-Phosphate Dehydrogenase GAPDH from Clostridium beijerinckii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-01-09 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9789 |
Spacegroup name | P 62 2 2 |
Unit cell lengths | 120.640, 120.640, 122.135 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.910 - 1.580 |
R-factor | 0.194 |
Rwork | 0.193 |
R-free | 0.21130 |
Structure solution method | SAD |
RMSD bond length | 0.008 |
RMSD bond angle | 0.920 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.610 |
High resolution limit [Å] | 1.580 | 1.580 |
Number of reflections | 71898 | 2218 |
<I/σ(I)> | 34.22 | |
Completeness [%] | 99.9 | |
Redundancy | 7.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 287 | 0.1 M HEPES sodium pH 8.5 0.2 M Magnesium chloride hexahydrate 30% v/v Polyethylene glycol 400 |