7CUA
The structure of YoeB dimer from Staphylococcus aureus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-05-24 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.97852 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 41.467, 91.449, 154.838 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.720 - 1.800 |
R-factor | 0.2006 |
Rwork | 0.199 |
R-free | 0.22720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6l8f |
RMSD bond length | 0.003 |
RMSD bond angle | 0.628 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 77.450 | 1.860 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.110 | 1.199 |
Rmeas | 0.032 | 0.339 |
Rpim | 0.114 | 1.247 |
Number of reflections | 27885 | 2724 |
<I/σ(I)> | 18.3 | |
Completeness [%] | 99.8 | |
Redundancy | 12.9 | |
CC(1/2) | 0.999 | 0.797 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 25% w/v polyethylene glycol 3350, 0.1 M citric acid pH 3.5, with 1/5 volume additive of 20% 1.0 M ammonium sulfate. |