Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7CMD

Crystal structure of the SARS-CoV-2 PLpro with GRL0617

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U
Synchrotron siteSSRF
BeamlineBL17U
Temperature [K]100
Detector technologyPIXEL
Collection date2020-07-17
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9792
Spacegroup nameP 1 21 1
Unit cell lengths60.467, 123.510, 146.814
Unit cell angles90.00, 90.06, 90.00
Refinement procedure
Resolution94.510 - 2.590
R-factor0.2464
Rwork0.244
R-free0.29800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6wrh
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]94.5102.750
High resolution limit [Å]2.5902.590
Rmerge0.3180.143
Number of reflections13103921011
<I/σ(I)>3.240.88
Completeness [%]99.297.8
Redundancy3.453.38
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2960.24M ammonium acetate,0.1M sodium citrate pH5.6,24% PEG4000

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon