7CMD
Crystal structure of the SARS-CoV-2 PLpro with GRL0617
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-17 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.467, 123.510, 146.814 |
Unit cell angles | 90.00, 90.06, 90.00 |
Refinement procedure
Resolution | 94.510 - 2.590 |
R-factor | 0.2464 |
Rwork | 0.244 |
R-free | 0.29800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6wrh |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 94.510 | 2.750 |
High resolution limit [Å] | 2.590 | 2.590 |
Rmerge | 0.318 | 0.143 |
Number of reflections | 131039 | 21011 |
<I/σ(I)> | 3.24 | 0.88 |
Completeness [%] | 99.2 | 97.8 |
Redundancy | 3.45 | 3.38 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 296 | 0.24M ammonium acetate,0.1M sodium citrate pH5.6,24% PEG4000 |