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7CJF

Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody Fab

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U
Synchrotron siteSSRF
BeamlineBL17U
Temperature [K]100
Detector technologyCCD
Collection date2020-06-03
DetectorADSC QUANTUM 315r
Wavelength(s)0.9790
Spacegroup nameC 2 2 21
Unit cell lengths85.958, 148.575, 144.655
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution36.164 - 2.108
R-factor0.1864
Rwork0.185
R-free0.22850
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7bwj
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.14_3228)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.140
High resolution limit [Å]2.1005.7002.100
Rmerge0.0910.0330.800
Rmeas0.0970.0350.844
Rpim0.0310.0110.264
Total number of observations475973
Number of reflections4962328442639
<I/σ(I)>7.9
Completeness [%]92.799.899.8
Redundancy9.69.29.7
CC(1/2)0.9990.895
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1EVAPORATION29320%(w/v)PEG 3350 0.2M potassium citrate tribasic

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