7CGI
Crystal Structure of PUF-8 in Complex with PBE-RNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-24 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.978 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 89.261, 89.261, 117.019 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.559 - 2.796 |
R-factor | 0.2056 |
Rwork | 0.203 |
R-free | 0.24880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3q0q |
RMSD bond length | 0.002 |
RMSD bond angle | 0.458 |
Data reduction software | XDS |
Data scaling software | HKL-2000 (V716.1) |
Phasing software | PHASER |
Refinement software | PHENIX (1.10-2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 31.559 | 40.000 | 2.850 |
High resolution limit [Å] | 2.796 | 7.580 | 2.800 |
Rmerge | 0.132 | 0.046 | 0.623 |
Rmeas | 0.139 | 0.049 | 0.658 |
Rpim | 0.040 | 0.015 | 0.204 |
Number of reflections | 12260 | 711 | 594 |
<I/σ(I)> | 3.9 | ||
Completeness [%] | 99.9 | 99.7 | 100 |
Redundancy | 11.5 | 9.8 | 9.8 |
CC(1/2) | 0.999 | 0.871 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293.15 | 1M LiCl, 0.1M Citric acid (pH 5.0) and 15% PEG6000 |