Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7CDP

Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 42 kGy (3000 images)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL41XU
Synchrotron siteSPring-8
BeamlineBL41XU
Temperature [K]298
Detector technologyPIXEL
Collection date2019-11-13
DetectorDECTRIS EIGER X 16M
Wavelength(s)1
Spacegroup nameP 43 21 2
Unit cell lengths78.381, 78.381, 38.775
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution55.420 - 1.800
R-factor0.1869
Rwork0.185
R-free0.21650
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)4eta
RMSD bond length0.005
RMSD bond angle0.722
Data reduction softwareCrystFEL (0.8.0)
Data scaling softwareCrystFEL (0.7.0)
Phasing softwarePHENIX (1.17.1_3660)
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]55.4201.830
High resolution limit [Å]1.8001.800
Number of reflections11720575
<I/σ(I)>5.5
Completeness [%]100.0
Redundancy130.6
CC(1/2)0.9650.654
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1BATCH MODE293The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon