7C8W
Structure of sybody MR17 in complex with the SARS-CoV-2 S receptor-binding domain (RBD)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-05-10 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 73.691, 73.691, 158.577 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.710 - 2.770 |
R-factor | 0.211 |
Rwork | 0.205 |
R-free | 0.26680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6m0j |
RMSD bond length | 0.009 |
RMSD bond angle | 1.008 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.710 | 2.920 |
High resolution limit [Å] | 2.770 | 2.770 |
Rmerge | 0.276 | 2.222 |
Rpim | 0.062 | 0.494 |
Number of reflections | 13308 | 1909 |
<I/σ(I)> | 11.1 | 1.5 |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 21 | 20.8 |
CC(1/2) | 0.997 | 0.753 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2M magnesium formate dihydrate, 20% w/v polyethylene glycol 3350 |