7C8P
Structural and functional characterization of human group A rotavirus P[25] VP8*
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 118 |
Detector technology | CCD |
Collection date | 2017-12-16 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97774 |
Spacegroup name | P 43 3 2 |
Unit cell lengths | 164.419, 164.419, 164.419 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.574 - 2.600 |
R-factor | 0.198 |
Rwork | 0.197 |
R-free | 0.21560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4drv |
RMSD bond length | 0.004 |
RMSD bond angle | 0.717 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.690 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.185 | |
Number of reflections | 23849 | 23849 |
<I/σ(I)> | 11.968 | 3.077 |
Completeness [%] | 99.3 | 100 |
Redundancy | 8.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 2.0 M ammonium sulfate, 0.1 M sodium HEPES pH 7.5, and 2% v/v polyethylene glycol 400 |