7C4R
Crystal structure of hydrogen peroxide treated zebrafish TRF2 complexed with DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 93 |
Detector technology | PIXEL |
Collection date | 2015-11-25 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 63.901, 63.901, 140.234 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.745 - 2.440 |
R-factor | 0.2302 |
Rwork | 0.227 |
R-free | 0.25710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1w0u |
RMSD bond length | 0.003 |
RMSD bond angle | 0.489 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.753 | 2.537 |
High resolution limit [Å] | 2.440 | 2.440 |
Rmerge | 0.090 | 0.379 |
Number of reflections | 12129 | 1167 |
<I/σ(I)> | 17.65 | 1.23 |
Completeness [%] | 93.9 | 83 |
Redundancy | 3.6 | 2.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 289 | 20-25% (w/v) polyethylene glycol 3000, 100 mM Sodium acetate/acetic acid |