7C0X
Crystal structure of a dinucleotide-binding protein (T240A) of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2019-07-16 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 66.640, 58.080, 122.020 |
Unit cell angles | 90.00, 95.34, 90.00 |
Refinement procedure
Resolution | 60.750 - 1.770 |
R-factor | 0.1876 |
Rwork | 0.186 |
R-free | 0.22640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7c0f |
RMSD bond length | 0.016 |
RMSD bond angle | 2.025 |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.750 | 60.750 | 1.810 |
High resolution limit [Å] | 1.770 | 9.380 | 1.770 |
Rmerge | 0.170 | 0.128 | 0.486 |
Rmeas | 0.192 | 0.144 | 0.554 |
Rpim | 0.089 | 0.065 | 0.262 |
Total number of observations | 355385 | 2763 | 16007 |
Number of reflections | 83929 | 659 | 3881 |
<I/σ(I)> | 6.6 | 8.6 | 2.6 |
Completeness [%] | 93.1 | 98.9 | 81.7 |
Redundancy | 4.2 | 4.2 | 4.1 |
CC(1/2) | 0.974 | 0.972 | 0.764 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 0.2M ammonium phosphate, 0.1M sodium cacodylate pH 6.5, 30% PEG 8000 |