7C0R
Crystal structure of a dinucleotide-binding protein (F79A) of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (Form I)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2019-01-07 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 58.390, 121.580, 66.190 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.790 - 1.770 |
R-factor | 0.1449 |
Rwork | 0.143 |
R-free | 0.18230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7c0f |
RMSD bond length | 0.018 |
RMSD bond angle | 2.286 |
Data reduction software | HKL-3000 (3000) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.790 | 60.790 | 1.800 |
High resolution limit [Å] | 1.770 | 9.380 | 1.770 |
Rmerge | 0.116 | 0.090 | 0.574 |
Rmeas | 0.130 | 0.100 | 0.655 |
Rpim | 0.058 | 0.045 | 0.308 |
Total number of observations | 389869 | 3022 | 17149 |
Number of reflections | 85038 | 627 | 4067 |
<I/σ(I)> | 9.3 | 16.6 | 2.4 |
Completeness [%] | 95.4 | 99.7 | 86.7 |
Redundancy | 4.6 | 4.8 | 4.2 |
CC(1/2) | 0.991 | 0.988 | 0.706 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 6.5 | 277 | 0.2M ammonium phosphate, 0.1M sodium cacodylate pH6.5, 30% PEG 8000 |