7C0L
Crystal structure of a dinucleotide-binding protein of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (Form III)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2016-05-20 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 65.910, 58.120, 102.400 |
Unit cell angles | 90.00, 93.04, 90.00 |
Refinement procedure
Resolution | 56.790 - 1.850 |
R-factor | 0.1802 |
Rwork | 0.178 |
R-free | 0.22270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7c0f |
RMSD bond length | 0.014 |
RMSD bond angle | 1.882 |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 56.790 | 56.730 | 1.890 |
High resolution limit [Å] | 1.850 | 9.050 | 1.850 |
Rmerge | 0.125 | 0.106 | 0.425 |
Rmeas | 0.152 | 0.130 | 0.527 |
Rpim | 0.086 | 0.075 | 0.307 |
Total number of observations | 1493 | 8450 | |
Number of reflections | 55937 | 560 | 3383 |
<I/σ(I)> | 9.3 | 12.1 | 2.9 |
Completeness [%] | 83.8 | 91.3 | 82.3 |
Redundancy | 2.8 | 2.7 | 2.5 |
CC(1/2) | 0.978 | 0.976 | 0.768 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 0.2M ammonium phosphate, 0.1M sodium cacodylate pH6.5, 30% PEG 8000 |