7C0K
Crystal structure of a dinucleotide-binding protein of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (Form II)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2017-04-13 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 66.170, 57.520, 121.140 |
Unit cell angles | 90.00, 94.99, 90.00 |
Refinement procedure
Resolution | 46.570 - 1.800 |
R-factor | 0.1475 |
Rwork | 0.146 |
R-free | 0.17620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7c0f |
RMSD bond length | 0.018 |
RMSD bond angle | 2.120 |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.570 | 46.570 | 1.830 |
High resolution limit [Å] | 1.800 | 9.520 | 1.800 |
Rmerge | 0.075 | 0.034 | 0.539 |
Rmeas | 0.086 | 0.039 | 0.619 |
Rpim | 0.041 | 0.018 | 0.301 |
Total number of observations | 361385 | ||
Number of reflections | 84314 | 614 | 4443 |
<I/σ(I)> | 12.3 | ||
Completeness [%] | 99.9 | 99.3 | 99.6 |
Redundancy | 4.3 | 4.2 | 4.2 |
CC(1/2) | 0.998 | 0.999 | 0.792 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 0.2M ammonium phosphate, 0.1M sodium cacodylate pH6.5, 30% PEG 8000 |