7BYY
Crystal structure of bacterial toxin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-23 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 70.180, 45.220, 120.380 |
Unit cell angles | 90.00, 92.77, 90.00 |
Refinement procedure
Resolution | 19.994 - 2.799 |
R-factor | 0.2404 |
Rwork | 0.237 |
R-free | 0.29690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xun |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.994 | 19.994 | 2.870 |
High resolution limit [Å] | 2.799 | 12.520 | 2.800 |
Rmerge | 0.193 | 0.039 | 1.990 |
Rmeas | 0.200 | 0.041 | 2.065 |
Number of reflections | 19048 | 241 | 1389 |
<I/σ(I)> | 13.91 | 52.35 | 1.38 |
Completeness [%] | 99.9 | 98 | 98.9 |
Redundancy | 13.678 | 11.112 | 13.885 |
CC(1/2) | 0.997 | 0.999 | 0.607 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 26% PEG 3350, 0.03M Na Citrate 6.5, 0.1M Tris HCl 7.6 |